Upload a new strain’s genome sequence to characterize/compare
Choose a FASTA format file containing a single virus genome sequence (nucleotides) and click 'Upload File':
NCBI Reference Sequence Details:
  • Record ID: NC_045512
  • Record Description: Severe acute respiratory syndrome coronavirus 2 isolate Wuhan-Hu-1, complete genome
  • Sequence Length: 29903 bp
    • Softwares/Tools Details:
  • Multiple Sequence Alignment: MAFFT v7.453 (2019/Nov/8)
  • Alignment Visualization: MSAViewer
  • Phylogenetic Tree Building: MEGA v10.1.8
  • Phylogenetic Tree Visualization: Phylo.io
    • Click to see sequence details
    SARS-CoV-2: Genome Sequence Alignment
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    SARS-CoV-2: Phylogenetic Tree View Phylogenetic Tree